Sigma-1 receptor

SIGMAR1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 5HK1, 5HK2
Identifiers
Aliases	SIGMAR1, ALS16, OPRS1, SIG-1R, SR-BP, SR-BP1, SRBP, hSigmaR1, sigma1R, DSMA2, sigma non-opioid intracellular receptor 1
External IDs	OMIM: 601978 MGI: 1195268 HomoloGene: 39965 GeneCards: SIGMAR1
Gene location (Human) Chr. Chromosome 9 (human) Band 9p13.3 Start 34,634,722 bp End 34,637,844 bp
Gene location (Mouse) Chr. Chromosome 4 (mouse) Band 4|4 A5 Start 41,738,493 bp End 41,756,157 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in right lobe of liver stromal cell of endometrium right coronary artery left uterine tube right adrenal gland canal of the cervix left adrenal gland left coronary artery thoracic aorta ascending aorta Top expressed in left lobe of liver lip yolk sac superior frontal gyrus external carotid artery internal carotid artery white adipose tissue neural tube somite proximal tubule More reference expression data BioGPS n/a
Gene ontology Molecular function G protein-coupled opioid receptor activity identical protein binding signaling receptor activity Cellular component postsynaptic membrane cell projection endoplasmic reticulum membrane membrane growth cone lipid droplet plasma membrane synapse integral component of plasma membrane cell junction nuclear inner membrane nuclear outer membrane nucleus nuclear envelope endoplasmic reticulum integral component of membrane cytoplasmic vesicle postsynaptic density Biological process lipid transport regulation of neuron apoptotic process nervous system development G protein-coupled opioid receptor signaling pathway protein homotrimerization signal transduction cell death in response to hydrogen peroxide Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 10280 18391 Ensembl ENSG00000147955 ENSMUSG00000036078 UniProt Q99720 O55242 RefSeq (mRNA) NM_001282205 NM_001282206 NM_001282207 NM_001282208 NM_001282209 NM_005866 NM_147157 NM_147158 NM_147159 NM_147160 NM_011014 NM_001286538 NM_001286539 NM_001286540 NM_001286541 NM_001286542 NM_001286551 NM_001286605 RefSeq (protein) NP_001269134 NP_001269135 NP_001269136 NP_001269137 NP_001269138 NP_005857 NP_671513 NP_001273467 NP_001273468 NP_001273469 NP_001273470 NP_001273471 NP_001273480 NP_001273534 NP_035144 Location (UCSC) Chr 9: 34.63 – 34.64 Mb Chr 4: 41.74 – 41.76 Mb PubMed search
Wikidata
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The sigma-1 receptor (σ₁R), one of two sigma receptor subtypes, is a chaperone protein at the endoplasmic reticulum (ER) that modulates calcium signaling through the IP3 receptor. In humans, the σ₁ receptor is encoded by the SIGMAR1 gene.

The σ₁ receptor is a transmembrane protein expressed in many different tissue types. It is particularly concentrated in certain regions of the central nervous system. It has been implicated in several phenomena, including cardiovascular function, schizophrenia, clinical depression, the effects of cocaine abuse, bipolar disorder, and cancer. Much is known about the binding affinity of hundreds of synthetic compounds to the σ₁ receptor.

An endogenous ligand for the σ₁ receptor has yet to be conclusively identified, but tryptaminergic trace amines and neuroactive steroids have been found to activate the receptor. Especially progesterone, but also testosterone, pregnenolone sulfate, and dehydroepiandrosterone sulfate (DHEA-S) bind to the σ₁ receptor.

Characteristics

The σ₁ receptor is defined by its unique pharmacological profile. In 1976 Martin reported that the effects of N-allylnormetazocine (SKF-10,047) could not be due to activity at the μ and κ receptors (named from the first letter of their selective ligands morphine and ketazocine, respectively) and a new type of opioid receptor was proposed; σ (from the first letter of SKF-10,047). The opioid classification was eventually dropped however resulting from it not possessing the canonical opioid G-protein coupled receptor structure and the receptor was later referred to as simply the σ₁ receptor. It was found to have affinity for the (+)-stereoisomers of several benzomorphans (e.g., (+)-pentazocine and (+)-cyclazocine), as well as various structurally and pharmacologically distinct psychoactive chemicals such as haloperidol and cocaine, and neuroactive steroids like progesterone. Pharmacological studies with σ₁ agonists often follow a bell-shaped dose-response curve. Thus care should be taken when designing experiments and choosing doses of ligands.

Structure

The mammalian σ₁ receptor is an integral membrane protein with 223 amino acids. It shows no homology to other mammalian proteins but strikingly shares 30% sequence identity and 69% similarity with the ERG2 gene product of yeast, which is a C8-C7 sterol isomerase in the ergosterol biosynthetic pathway. Hydropathy analysis of the σ₁ receptor indicates three hydrophobic regions. A crystal structure of the σ₁ receptor was published in 2016.

Functions

A variety of specific physiological functions have been attributed to the σ₁ receptor. Chief among these are modulation of Ca²⁺ release, modulation of cardiac myocyte contractility, and inhibition of voltage gated K⁺ channels. The reasons for these effects are not well understood, even though σ₁ receptors have been linked circumstantially to a wide variety of signal transduction pathways. Links between σ₁ receptors and G-proteins have been suggested such as σ₁ receptor antagonists showing GTP-sensitive high-affinity binding; there is also, however, some evidence against a G-protein coupled hypothesis. The σ₁ receptor has been shown to appear in a complex with voltage gated K⁺ channels (K_v1.4 and K_v1.5), leading to the idea that σ₁ receptors are auxiliary subunits. σ₁ receptors apparently co-localize with IP₃ receptors on the endoplasmic reticulum where they may be involved in preventing endoplasmic reticulum stress in neurodegenerative diseases. Also, σ₁ receptors have been shown to appear in galactoceramide enriched domains at the endoplasmic reticulum of mature oligodendrocytes. The wide scope and effect of ligand binding on σ₁ receptors has led some to believe that σ₁ receptors are intracellular signal transduction amplifiers.

Recently, σ₁R has been implicated in autophagosome formation and maturation. Autophagy is a broad homeostatic, metabolic, cytoplasmic quality control, and metabolic process affecting many functions in the cell. σ₁R is targeted by the nsp6 protein of SARS-CoV-2 to inhibit autophagosome formation as a process competing with the coronavirus for cellular endomembranes that the virus needs for its own replication. This along with the observed beneficial effects of sigma-1 receptor agonist and SSRI fluvoxamine in patients with SARS-COV-2 infection has led to the hypothesis that the sigma-1 receptor could be a target for the treatment of SARS-COV-2.

There has been much interest in the sigma-1 receptor and its role in age-related neurodegenerative diseases such as Alzheimer's disease. During healthy ageing, the density of sigma-1 receptors has been to increase. However, in diseases such as Alzheimer's disease, there appears to be a reduction in sigma-1 receptor expression. It has been suggested that targeting the sigma-1 receptor along with other receptors could increase neuron survival and function in neurodegenerative disease. The activation of autophagy has also been suggested as a downstream mechanism linked to sigma-1 receptor activation.

Knockout mice

σ₁ receptor knockout mice were created in 2003 to study the effects of endogenous DMT. Strangely, the mice demonstrated no overt phenotype. As expected, however, they did lack locomotor response to the σ ligand (+)-SKF-10,047 and displayed reduced response to formalin induced pain. Speculation has focused on the ability of other receptors in the σ family (e.g., σ₂, with similar binding properties) to compensate for the lack of σ₁ receptor.

Clinical significance

Mutations in the SIGMAR1 gene have been associated with distal spinal muscular atrophy type 2.

Ligands

The following ligands have high affinity for the σ₁ receptor and possess high binding selectivity over the subtype σ₂:

Agents exist that have high σ₁ affinity but either lack subtype selectivity or have high affinity at other binding sites, thus being more or less dirty/multifunctional, like haloperidol. Furthermore, there is a wide range of agents with an at least moderate σ₁ involvement in their binding profile.

See also

• Sigma-2 receptor